Scaffold Ga0150985_111955240

Overview

Basic Information

• Taxon OID: 3300012212
• Scaffold ID: Ga0150985_111955240
• Source Dataset Name: Combined assembly of Hopland grassland soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1954
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.972988
  • Long. (^o): -123.116539

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002111	Metagenome / Metatranscriptome	592	Y
F019193	Metagenome / Metatranscriptome	231	Y
F019580	Metagenome / Metatranscriptome	229	Y
F019913	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150985_1119552401	F019580	GAG	VYVRHLTSLQFLTYVSFLGVVLAMVMRYLPGKAPPLRTEPYPEEELGAHDGRLAKYFVAGGLFLVLGGLHMAVKNLPWPAQWLAGGGYPGHLVRDLSNTHVMIVGGGTLIATGLCWYALPRIVGRPLASNALAQCAFWFTAAGLAVFYVALIGDGIEMARLVHHGWTYPDAKA
Ga0150985_1119552403	F002111	N/A	MGAAPPFASFSSFTEGVASPAQWPVLYASLQAHKAHVQEYPGCQRFDVFVRIEDSGGARFHCYTTWDTPEQLEAFLERGYTVERLLADVGGIHAERSIVLEKLF*
Ga0150985_1119552404	F019913	AGGAGG	MGMPSGSSPEEAQAYYHYMLSQHQTEGRVTTWYVDWLSLAWLWGFVAAISLILIWWIWQYRTTRQKTGIYPVDAWSGYATELAGPASLFFVLLCALITGFAVALIVGHLVNGQIF*
Ga0150985_1119552406	F019193	N/A	ELKAWVATQQRLTANPSFDARPVTDPFMQEAMRVFPGLSPADHLVLNDGKTPLSLDQAAGAIRALYTDMLNRAWTDAARRGEKLPPDSQKLIPPEVPGQQ*