Scaffold Ga0150985_106434778

Overview

Basic Information

• Taxon OID: 3300012212
• Scaffold ID: Ga0150985_106434778
• Source Dataset Name: Combined assembly of Hopland grassland soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 882
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.972988
  • Long. (^o): -123.116539

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004910	Metagenome / Metatranscriptome	419	Y
F005165	Metagenome / Metatranscriptome	410	Y
F016609	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150985_1064347781	F004910	GAG	VPTRYSWQTSYQSALLETDWKKMVELIQAAESEIHKRRLQLSKDHNGTQEEREAVVNALNGLRILGMDAAAWR
Ga0150985_1064347782	F005165	GAGG	MSDINDANHPAWRQLCQAALLETNPAKLLERIAHARSVIANRIANRIEEGYKKPPTSEQIALLDALSTLDSLRRITERQNGYQSKAG*
Ga0150985_1064347783	F016609	GAGG	MTETYKWHQIYKFALLESDWSKIGGRIQAVEAALHARKNEFALNHGGTPAENQAIEDALHGLDILRKEVAAWHESKQASLN*