Scaffold Ga0137377_10026175

Overview

Basic Information

• Taxon OID: 3300012211
• Scaffold ID: Ga0137377_10026175
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5227
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021735	Metagenome	217	Y
F062651	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137377_100261755	F021735	GGAG	VSADEMPAPAREPHRTSAEERGAPSVSLPLRIQPARASALGWSPDLFALTLLVGNAAFRQEDGALVPRGPGPVVAVCAEYERPLVSLDPPALASYSLARARLSGMPTLRLPGGWFRGPLRLESTRRAARASERREEAVARAVRLLDELNQAWQRRLGAFLEIAWPVYGPEHAGPLLDAVGGTPLPELPLR*
Ga0137377_100261756	F062651	AGGAGG	MQKSIVILSLAALLACAHEETAQLPTERDWEKGLDAARGPQIAPVGPIDTDQGAYNYIRRREQEKDLGSRMTAAGLDEIIAASSQVLASAMAMPLFRAGVYLGAPRLIERGCTSARRVTQGALRNTGNVDAVLQGCGALTAAKQGTTDACGDGKQKLRDAYALLAADKPQDAGRTAADAVRMLRDRCPKMTAPLRTPVDPSSRGFLIVWVLHANDAPPATFLAGDTAPNTADAINDAFLRGVQAVRPVAHNP*