Scaffold Ga0137377_10001718

Overview

Basic Information

• Taxon OID: 3300012211
• Scaffold ID: Ga0137377_10001718
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15646
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002563	Metagenome	547	Y
F011353	Metagenome	292	Y
F035117	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137377_1000171812	F002563	N/A	MQLQIGDRMTDSTGEWEVVGRPYTTVGGKNVNVRVQRVDKSGVTEIRMRGAYEKVSVKRATKGGQITWMV*
Ga0137377_1000171824	F035117	GGAGG	MDASTSVATETVYWALDGGIHHAKCAQRMVLTARDSQELHFSCLACTESVRLPLAVLTRVAVAT*
Ga0137377_100017188	F011353	GGAGG	MNADATTPAWNGYRLTVACPCGVMFERWVTPLDAELDLLRAAGLN*