Scaffold Ga0137377_10001165

Overview

Basic Information

• Taxon OID: 3300012211
• Scaffold ID: Ga0137377_10001165
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17885
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018439	Metagenome / Metatranscriptome	235	Y
F020075	Metagenome / Metatranscriptome	226	Y
F061232	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137377_100011652	F061232	N/A	MSTASKLSRKGTKMARFERVNFLRASLSPEEVHLYSFKGSLCGWDQGQFSNEEIPILIEGAAFLGHVTNARLIIEPSEAVSLPTVLGGLGPKLLERIVLDLPGGLFDAEKGGKETMKHLADQPGYLSLDFADMDHLGVYRTSACWPVMKYNMNGRDPAFLPHTLYSITAYTGAIVGPPAPIEFAEVIRDRGIRIVTYTSKAS*
Ga0137377_100011654	F018439	AGGAGG	MARYTVQISTRSCCGKHRWPLVDIVETLAASGFEYILLEEITFAGECVSLTLPLETGLKGDQAQALVDVILHRLSQSMGSNALCFTGNLTVTASVEADETRVRESRTLIKGKGLGCHLEPIRFPVSTEVM*
Ga0137377_100011655	F020075	N/A	MERYQFEIRFRLAAELKQSYSYVEMVHCLGNSGLQDIELERVGFLNYKDTPLALPLPSDMRSEEAESIGHEIIRRLGQALGWDPRHASGTLVLWGQGRANEEEAQQARQMLIKQGYTVFLEVPR*