Scaffold Ga0137378_10018734

Overview

Basic Information

• Taxon OID: 3300012210
• Scaffold ID: Ga0137378_10018734
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6052
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008197	Metagenome	337	Y
F009901	Metagenome / Metatranscriptome	311	Y
F035394	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137378_100187341	F008197	AGGA	VNTRLRLTTLAAVFAFLTPATSTLHAQVLAATEGIDVPDGTRKCIKPESRAPVPTNLFVPFVCTEPVVNVSATPGNQAESFVLVNPTNANNLVAFSNTNSASIFRAYSMDSGATWTRGTV
Ga0137378_100187342	F035394	N/A	MNLLRSIILSILASLGLLTVPATARAQVTSVEQNPHFADTPSRADAASLQKKATQAQARIHANKDDRDQLMRGGQD*
Ga0137378_100187346	F009901	N/A	MVAGISVGSNKGLLQLYEGFGLFTQMKSALLAVIFWITGGVAILFAVPAEEKAPVVKIHPDKWAEDAPLVPQIEKELLVVPEPLEHYSVAQAKTKTENQAPGRHRHVARPRPNFFEKLVVGFMNLQKHRPAKYLWRRG*