NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137378_10005926

Scaffold Ga0137378_10005926


Overview

Basic Information
Taxon OID3300012210 Open in IMG/M
Scaffold IDGa0137378_10005926 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10593
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019893Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0137378_100059268F019893N/AMKSALMVLLSLSGIFAGQAVAQEPEITFHSSTHLVLVDVVALKNGLPDKTLRREDFQVLDNGRPVSIKTFDSGAQFTTRALALWFVVQCSMEGWQREGSGVFRGKVSVFEPALKFVEKQDTVAVAHWCDDGQSKLDLMPTSHVEEVAPVLEQELAHVVSAKSHDRTGELALQKTLQLMIGATRSSKPEPVPVVIFLYGDYSAMPKLEADHFIGELLETSAVAYGVRDRRSPRIWSLGEQGAIANYIATQTGGEYLRETPDTYAQGLEKILQQLHGRYQLGFQPEALDGKRHTLKVELTGTAKKQHKGVRLRHRTAYVPVPTR*

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