Scaffold Ga0137379_10166822

Overview

Basic Information

• Taxon OID: 3300012209
• Scaffold ID: Ga0137379_10166822
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2114
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000257	Metagenome / Metatranscriptome	1447	Y
F000535	Metagenome / Metatranscriptome	1044	Y
F067071	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137379_101668222	F000535	AGG	MTTTRTHFTFRVDTWTPDGESIVEYVAGVEDYQVALATYRAACERWPGTPMTLRQGARVIEDSRRLRVV*
Ga0137379_101668223	F067071	N/A	MAMTGKNRIMIYGLRTDRILAGVLTVASGGWLILILLGYWESLGWGHVLGLFVLFGIGVASLLTGKRRT*
Ga0137379_101668224	F000257	AGGAGG	MTRRKREIIGLRNERDFPYLVELALPPGGFGSIFLEIDAFHRERRIPVRRGRSRHEVKPFYIRFCFPDAATADAFRNRFGGECLTYAPD*