Scaffold Ga0137379_10113518

Overview

Basic Information

• Taxon OID: 3300012209
• Scaffold ID: Ga0137379_10113518
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2607
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029395	Metagenome	188	Y
F039560	Metagenome / Metatranscriptome	163	Y
F049864	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137379_101135182	F039560	GAGG	MESLVVSPTAEPRGSSDIGDEFFFLKLFLCHTIDSASRAGAAPIETELFGVETRVERLGFYFTPVINPVL*
Ga0137379_101135183	F049864	GGAGG	LAKFILSVGDDTFRILESEAKRRDVTVQQLLRAVIVPEWVRENPEVNPASMTPREIAPHLMHQSIYPGQRDQLLQTPVSRLRT*
Ga0137379_101135185	F029395	N/A	YGPPESDVRDAKTDGRLRDLLVDLIASSKALDARVWLDGVYTDIDDEQVRGEWMNDRDVYFKVEGRIDKRNGS*