Scaffold Ga0137376_10104463

Overview

Basic Information

• Taxon OID: 3300012208
• Scaffold ID: Ga0137376_10104463
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2403
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006961	Metagenome	361	Y
F029527	Metagenome	188	N
F085996	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137376_101044631	F029527	GGAGG	MKPRIVAICAIVAFVTCGDSSPAQFTDCAYITVFNPCPVSSETRGDCEPIIDPQIACQDCPPGAGAWWIVNNRKDEEAKVTIRVTLWDRALGTSTFTDQALTLAPGEKRPLGCSLPAPQPQYGWSVQDCQPHSEQVFAPEQLTPTEKKFADAQDAFIDHVGQLWNANLESNYRQLVPGTVRVELRTSPEGELVETSVLSNASNELAAQLITDAIRPAIRFLATGKSSKITAEVTAFAAEGSDLEPRHKRPVFNVSVSQGGLHYPYERGATFSFDDLSELNGLGPK*
Ga0137376_101044632	F006961	N/A	MKSDKPEQTDFVLLGTYAPREAVKLLARFKAAGIPFRMQPRKPSPQPGPTAGIYISVDSARGTEVAEIHRDFFGDGLPNYDSSFFRDHHNV*
Ga0137376_101044634	F085996	N/A	MDMPFAAPVLVIALLAFTSCASTKPAIYSDSRSVSRADIEAAIQLVQQRCARDRRGLLPVFRVDVDRFDRIFVHCGPHYGVANAAGALQFVVERRGGRWQITGMSQYTPNPERVIVT*