NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137381_10229028

Scaffold Ga0137381_10229028


Overview

Basic Information
Taxon OID3300012207 Open in IMG/M
Scaffold IDGa0137381_10229028 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1613
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F019580Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0137381_102290282F000805N/AMPKGDAPLKAQQFYHYLQGHQETMYHPDTWHVRWLDLAWLWGFVIALALTLLLWVWQYRTTRQKRGGGLYPVDSFGGYTTELAGPATLFFLLFVIVLTAWAIALIVGHLVWGQKF*
Ga0137381_102290283F001079AGAAGMEAAMGSPSALPYVAWSAASAAVVPAADWEHVFGFMQAFKGHVQEYPGCQRFEAFAEPLADGAMRLSCYTTWDTPEQLEAFLERGYTFERMLHDAAGLRAEATRVVEKIF*
Ga0137381_102290284F000280GGAGMDEPREEQRPARPLVGYRDVGEGIRHTRAAVTRAWIILVVIALLYLGWTLTVYFLEPGLR
Ga0137381_102290285F019580AGCAGVYLKHLSTLQFLTYASFFGVVVAALFRFLPGKKPPVRLEPYPDAEIGAHDRKLAKYFVGGGFFLVLGSVHMVVKNVPWIAERLARMGYAGHLVRDLSATHVMIVGGGTLLATGLCWLVLPRIVQRPLTSDGLAQCAFWFTVLGLFVFYVSLIGNGIA
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