Scaffold Ga0137381_10001576

Overview

Basic Information

• Taxon OID: 3300012207
• Scaffold ID: Ga0137381_10001576
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15420
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F012762	Metagenome	277	Y
F013280	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137381_1000157613	F012762	AGGA	LVEVEDQRVQTLLPNSFEDDPSLGTVERFPTVLHARASFSFDINPESLQRALVSALASLRANPKPIEITLADRDGYLKGQLTFRLGIGNGDSFDILDSREEERVLNRIENRGPFNMLDLALQLHYALGDSTRHKVHEDHYFFRLVFQPGRVEVLVHHLKGVRRVEPDELVRLIIEELNVELIRNRYGVVELEAVEIT*
Ga0137381_1000157616	F013280	N/A	LNTVRLLFWAAVAYAILLVLVRGIFPSESTPTVSLTGIPLIVIIVIIARDLARKSTSPTVRRPITTTTGFRGNPMRFLSGQFRVAATASNSYFENVVRGRLKELLVTKVALETGLENELVRRLLSAPMDGPRLLEDESLYRMLYGPTPQGGPARMSMISAAIDLIGAWKG*
Ga0137381_100015766	F006299	GGA	MTVSAEAVSKEVPEVVEFTQLRGRTTAEALRELVKDFGIVYVTALTRQGCSGCETQKPLFKTLAEKTSRENPAKVCFRGVQVNYESGDKQESWNSKRIFGHAAYPTYIIHVRSQVGPLEIYRSVYPPMEELEKQIKESFELAEFYKTEAQMRRD*