Scaffold Ga0137380_10044076

Overview

Basic Information

• Taxon OID: 3300012206
• Scaffold ID: Ga0137380_10044076
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4103
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013554	Metagenome / Metatranscriptome	270	Y
F031675	Metagenome / Metatranscriptome	182	Y
F103712	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137380_100440763	F013554	GGAGG	VTKPGRTPDEPRTRRQAGGPLVPAQRPGDKDTREIQDPYDLPFPDDRWPPGHPAYAVVIDQLRGWLPGTQPSLAEALETGHSHPRDPQADLEAEP*
Ga0137380_100440765	F031675	GGAGG	MTTPEPQAEPGDEEWWAEMAIAYNYGLIEPAEGTAEAEAFRQMDEYARREVERIAAAEAAEEAWRASRRGCAPQAGLEPEAGQ*
Ga0137380_100440767	F103712	AGGAGG	MTSGQRMTWDLIFDVFDVLDRHGYHRRDNQHTGHAVGMILDLTRVYGGSQDHPFGPYINEIPPSRTEPARPEPAAQDAVLIPVGEVKALLVALDIAADCQRDRAELCADCTSQSCPTCESRLRDAQAYDHLSAQLNQAVEVSAAATASQPEPGSPRIPAAQPDPAADREAGQ*