Scaffold Ga0137380

Basic Information
Taxon OID	3300012206 Open in IMG/M
Scaffold ID	Ga0137380_10004374 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012206 Open in IMG/M

Scaffold ID

Ga0137380_10004374 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12458
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (52.94%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12458

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (52.94%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.5673	Long. (^o)	-123.4758	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.5673

Long. (^o)

-123.4758

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002500	Metagenome / Metatranscriptome	553	Y
F007213	Metagenome / Metatranscriptome	355	N
F032967	Metagenome / Metatranscriptome	178	Y
F063531	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137380_100043741	F032967	N/A	KHKEFAVWDHKIQLIYGLVALTTAVSALLFFGALDGRFPSVYTSIFETFFVSSFVAVAVFVFFVARGRRRFRELWNQQNGLSANRQPNASRLED*
Ga0137380_1000437411	F002500	N/A	LADSTSQKYGRLSEAASSLPITFDDIELSVIAAFIGLAVTLPITYLIVDRIIDNNEKKKLVPVEKLAKERLRSKLGVGFLTTFLITLVIDITSASREKSPIPKDVLMLHIEKLKTAQSDLETLLGVYSNVLDVEIARLTSDVVLQIEHLQEDFEYLAETQPRPPTESHASHMEQVLLKTVHLTKQELIALGTDNTQIRALEDWLTQYTRETRPLPKKEQPIAVRGGHTI*
Ga0137380_1000437414	F007213	GAG	MVATFHDTVSYCFRSTLETMGSSVRDVVYDHLRRKGIPESEIPAQFDDVVRVLNESFGGSARVIIYKTLVELYQQYSMRVDFTYQDSLRDHLGLLRERVVVDHIIPRRAQREDPSLEGRLPFVQNLAPSSAR*
Ga0137380_1000437417	F063531	N/A	ENDTVLAMGCCDVLVLVSRVDQQDLFGTAVMVLLAETFEKPTFLTLNMVPPGVRIKDAVKVGKELAILFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLVNELAEATQPAN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137380_10004374

Overview

Ecosystem & Geography

Associated Families

Sequences