Scaffold Ga0137380_10000018

Overview

Basic Information

• Taxon OID: 3300012206
• Scaffold ID: Ga0137380_10000018
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102166
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (55.56%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000531	Metagenome / Metatranscriptome	1046	Y
F018693	Metagenome / Metatranscriptome	233	Y
F025959	Metagenome	199	N
F031823	Metagenome / Metatranscriptome	181	Y
F040032	Metagenome	162	Y
F081127	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137380_10000018106	F000531	GGA	LTYRQFAAEIGAPVTEAAVKKWPQRSKFPADAARLIVGKARDRGLVGVTLEWLLWGEGPGPQKAPKTTLSSSPEQPSQRAEAWEGREAWGSRLRAAPQEPHGHFAAQVGEALQADLSHNEFGQWSSAEVQHTVIWALKDLARRLRVLRFDMGKTFELTDGWAGKIGLPVRPPERSSDDEGAAEE*
Ga0137380_10000018107	F081127	GGAG	MKTVRPLVVGFVVCAIAFACDRSPTAPPTAPLAASKVQSQSTSKKTGLIPCAQSYDSMTQVIGPKGGYFAVGPHYLFVDSLVLTNPVSITAVAPADTVRWVRFQPDGLLFPTNQVDGWGAVVYTNYSDCGLPASDTLRIAQVSDSLSILGYLQTYVKAKKNPWSQGQQYVAALLPHFSNYAIAW*
Ga0137380_1000001838	F018693	GGA	VPRWLAHLLVVAGWLFTPALAWGASYAGLWLGALIGMQLARPLMMLAVGGLGAALLGFTALAVWVRFMRRVPHLLSHHMAPRPSEEQRAIAAAD*
Ga0137380_100000184	F040032	GGAGG	MNTLPTKREPPEPAEVEDTPTWRDLGERIRDLMKDFLREGKALERDLEPRLLPALKRLKAEIEKLIARLEERAGPGKPHP*
Ga0137380_1000001840	F025959	AGGA	MTGWLGARGQRAVVPSCLALLASCAPATRYESPSSVRGYDILITRRDSLSLEIARGLRRQGFTVRDRVHGGSRPTAYLFIFTFRETEPPALTWLHVRLGDARTGAIIASVSAPLDSLGATPSAQAQAIVDSLAAQAAVRRSLPPS*
Ga0137380_100000187	F031823	GGAGG	MRWTKSSLVLLLPGLAVACSKSEAKKLEEVRACTAITMNTPGAANCLVLQYKWKKKDALAYAQRFQHEQDSIAQVKADSTWRADAGKHQKEVDQCAVDPSGEVVRCLIGFGWAEARAKATEDSLWRHDASRHRDQLLTCTHQRKMQAGACLQLYYKWSPERALAVDDSVRRAQLRR*