Scaffold Ga0137362_10201500

Overview

Basic Information

• Taxon OID: 3300012205
• Scaffold ID: Ga0137362_10201500
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1713
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004288	Metagenome / Metatranscriptome	445	Y
F046930	Metagenome	150	Y
F051726	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137362_102015002	F046930	GGAGG	MPGLISIISALALLLTGAWLLHDGVLARDPLHLQIEIIAGATLLSAVVVCSVLLLRDWIKWKRAFGKYREG*
Ga0137362_102015003	F051726	GAGG	MSQRQIYRCQNRACGCEIIVTKTSVETRANPRCFCGSDMKKPYSPPVLRTLDPDDELVGRLEAERNLTS*
Ga0137362_102015004	F004288	GAGG	MNGGRHFNGRTEKRLPTLVPVYLASLEEPRSRERTLTENVSPHGARVISQRFWQSGEESLITPLTGEFRQVGRVIYCLPTAGDRFCLGVEFPDRTVKWREHSSA*