NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137362_10130540

Scaffold Ga0137362_10130540


Overview

Basic Information
Taxon OID3300012205 Open in IMG/M
Scaffold IDGa0137362_10130540 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2137
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F001367Metagenome / Metatranscriptome713Y
F006480Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0137362_101305401F006480N/AMRKAFIAGIVLLLCGVISARSTHEPLMFVFLRVDRDQDVAILRPMIAPDIGVQLDSGPRELKPGTVLQCATSLREHDAIVETKIATVTDLVLECGDHKFVVKSLDFNPHGK*
Ga0137362_101305402F000512N/AMILVVRETHATPESVAHRLVRAGGSNRFGEPNYRAVWGWNRLAWIGGKFEERDPATGSFLREVVELRQEPKYPAVNRWHIEKWLPPELYGSPRQWYAQTIERENGVCTPALGPYPSRGEYEHCFTLEGPRGEFLQLTPTIAEHIARAIEWSRKSPRAKRRAELYGRKSREESNYENWAFDVLDDAVPAFHKQPFVAAL*
Ga0137362_101305403F000739N/AMRNFHIWLKGILAAAISGAAGGILTGFAAVGIDPQHFNLQSGIGATMRIGAAAALINAVIGVAAYLQKSPLPTE*
Ga0137362_101305405F001367AGGAMPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDAVLLPYANSAYRKLQRAIGNAGGGGFIQDDALLVVTAVTQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERRNGSTDDFLEMVDLSQH
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