Scaffold Ga0137362_10005613

Overview

Basic Information

• Taxon OID: 3300012205
• Scaffold ID: Ga0137362_10005613
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8673
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013098	Metagenome / Metatranscriptome	274	Y
F015750	Metagenome / Metatranscriptome	252	Y
F016870	Metagenome / Metatranscriptome	244	N
F020983	Metagenome	221	N
F023196	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137362_1000561313	F016870	AGGAG	MYDRTIDRMSDGASEFLVQFYLNSPKLSITLLFAGWLVLFFLALWYFVLLPATSNNLVNGSFEARLVGWGTGWLEDFPAYRGASRLNQYLATRNSQTGQLAVADWRSDPTEHRPGGRFALLIEHRSDKQSEVYSTLSQRIRVKPRTGYNVQFWAKVDRIEHEGDLWLSPNGGSVAWDDPKIEVSGAGKGWQFYKLDFNSGDRVDLDVRFVAEGPLKAWVDDVVVSRVPAGETWVEKARAWLGSLWAVLR*
Ga0137362_1000561314	F013098	N/A	MSVAAVLVGGCSAAPFVGYRNGPVTLYIGDVSHICAAGGSNNRGCTMRYPNGRIEVYCADGDYECLAHELRHVADPTWEHDLDHRNVSAR*
Ga0137362_100056134	F023196	AGGGGG	MAGARRYRFVGAWGLVQIVVGFIVMLAAALAAFVVLSPWPADIVARVPGEWRARLAPAAIAGLLLAIVLGGSLVLSGQLLLLLRDIHRHVARLDRRDRRRGRDPGHSADRPDATSRLIPRR*
Ga0137362_100056135	F020983	N/A	MRWDESPRFLLIASIASGVLSAALSLAAIWDHPGYNVAAAALALLTILLAYRAFERSTHRRLGRIQREHLVLRLRQLPAPIDFRVVAVPDEEAVHFAHELLDVFVEAGWPAHGVYRALPANIASTGLFVAVQDGNFPSEEERRLLLALSEFGMYAVKSTSPKLTHAKALELLVGHRPTL*
Ga0137362_100056138	F015750	N/A	MDFGTIRLVIRGKLENGRLPLEKAARVLGRSATGEACDGCGMTIGTGQLAMDGLARGPGNKGMQLHLRCFEIWTQERSSLLRERDEGSTRRWSFDEQRA*