Scaffold Ga0137362

Basic Information
Taxon OID	3300012205 Open in IMG/M
Scaffold ID	Ga0137362_10002667 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012205 Open in IMG/M

Scaffold ID

Ga0137362_10002667 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11695
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11695

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (82.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000517	Metagenome / Metatranscriptome	1061	Y
F006351	Metagenome / Metatranscriptome	375	Y
F007743	Metagenome	345	Y
F046925	Metagenome / Metatranscriptome	150	Y
F104063	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137362_1000266712	F046925	AGG	VLSAEERALLFLHCCDHAVERAPCASSFRLAELGSDLRGHTNLCTRCRQDLTDGVRAHLYKCDEISEIVRHRAQAVRVASERLVKESDELGDTADALRREVQTALQALQDAIRQSSLDNPERR*
Ga0137362_1000266718	F006351	AGGAGG	MAKPRPERKREPQAAADPKILPMELQVGDRLPDETSDWEVIAPPYSTAGGRMVHARVQRIDEPDSWEIRSWDASKRLSVKRATTEEGK*
Ga0137362_1000266720	F000517	AGGAG	MRTYLALLLAAVFALSPLDGVAGEKQIVDVKELAGRWQGWVTREQGQERATLIVSADGSYRALTPDGATTEGKFYLQDGKLRYRSSRTTGTASLSEDQGKTMLTVMPENSYYKTGKAEYERVKK*
Ga0137362_1000266721	F007743	GAG	MGDIHWSSMSSVVIVGLLLAILASEVASQPPTVPEQPLVIEGRVLWIDFGGQTLALAPANGTPAITIDLHRIRQSDYQGLHGNEYVRVVGFILRPSRRIQAFELYLVSPWYPQSP*
Ga0137362_100026677	F000517	N/A	VLDQPGQLFQFRKGRRSAMKMRLALLLAAVFVLSPLDGVAGEKQLTDVKVLAGSWRGWVTGEQGQERATMIVSADGSYKASTPRGLTSEGQFYLQDGKLRYRSSRTTGTASLSEDKGKTTLTVLPEDSTYGRADYERVK*
Ga0137362_100026679	F104063	N/A	MSRVAVAAGIVGLLLFVEPPLDGLAGYLLFQEGHQIIGTIVLSVNAIIAAGVLFSFLPEWCHPPGLTLAAAIAHYNVNVWLGLVALGYAVEVRAWSPALVLLVGVVLVAIGGRGVVAWLSSGRSRL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137362_10002667

Overview

Ecosystem & Geography

Associated Families

Sequences