Scaffold Ga0137374_10100164

Overview

Basic Information

• Taxon OID: 3300012204
• Scaffold ID: Ga0137374_10100164
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2736
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003830	Metagenome	466	Y
F008593	Metagenome	331	Y
F015456	Metagenome / Metatranscriptome	254	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137374_101001642	F003830	AGG	MMIDDDTLKQLLRINDELLQFCRWLNERRDTAISSRLIPLVDDLTHILLEAGKNKLH*
Ga0137374_101001643	F008593	GAG	MQPYKGYFIEGTALLVHPFSPDWYVGGSILVPGRYSSIVEIGRFQLQQFTVSIKELAEWFGLEIARMAVDVCLPQREN*
Ga0137374_101001645	F015456	AGGA	MNMFVENYRLEEPPLGGGRGLTNEAIPYPTISDEDWKVWTAFLPVRTEIDEKFLSGASPRLYAQTLPPKVRKELQRANRFFDRVEVWGKREIEKDPIAAGYQGNDRYLIARWGMEELVPFEVIKKSMPLILAHKYGIRSLPILAGLAGLSFLLWNLVS*