Scaffold Ga0137374_10068982

Overview

Basic Information

• Taxon OID: 3300012204
• Scaffold ID: Ga0137374_10068982
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3496
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F001935	Metagenome / Metatranscriptome	615	Y
F060750	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137374_100689821	F001935	N/A	VYLRHLSSLQFLTYVAFFGVVIAAVARFVPGRAPPVRETPYSPEELGAHDRKVAKYFVAAGLFLVVGSAHMVLKNLPWVEEYLARTGYAGHLVRDLSNTHVMIVGGGTL
Ga0137374_100689822	F060750	N/A	MGYRDTGEDVRHSRAALLRAWVILGAIAIFYLAWTLIVYFLEPGLR*
Ga0137374_100689823	F001079	AGAAG	MSASPQRSALPYVAWASGTFAEIPAAEWERVYGSMQALKAHVQEYPGCQKLEAFVEPGSEDGVRIHCYTVWDTPEQLEAFLERGYTLERMLHDVAGVTPTATLIMEKVF*
Ga0137374_100689824	F000805	GGA	MPSGDTPQKVQDYYQYLQAHQETVHAPATWHVRWLDLAWLWGFLIVLALVMLGWVWQYRSTRQRAGLYPVDRFGGYTTELAGPATFFFLLLTVVLACWAVVLIVGHIVWGQKF*