Scaffold Ga0137374_10032915

Overview

Basic Information

• Taxon OID: 3300012204
• Scaffold ID: Ga0137374_10032915
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5632
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002134	Metagenome / Metatranscriptome	590	Y
F023056	Metagenome / Metatranscriptome	211	Y
F099263	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137374_100329151	F023056	N/A	LFLHTAAGGDHLEAWRQFSGQITPDDPELRQLLQVWRQLEHERRKKVLEFSQDQLALSLLRVEKAFLGSVQTPEEAFEIVRNVSAGMAENGGRRRRSPSAKRPSAKSKSGR*
Ga0137374_100329152	F099263	N/A	MLIVEPRKGDPELVALVREAEDSEVERGMVAAGGGRKGQRAEYHCAACGYGIVVYERPPGCPMCSEGRWEHVEWRPFSPLLDDLVLPFGTQSQRCRLHAPSLPMAEKPIRYFRPGQAGASLEK*
Ga0137374_100329156	F002134	AGG	VDVVFEVASQRYALEERAATLMAENLRVKAAHEPGAEGTVGARAVADAIELRLIEDTADPISLGGDGAEAVFYALHAPSGGSDRPRALYHAVKRLHDERHRQKR*