Scaffold Ga0137374_10018638

Overview

Basic Information

• Taxon OID: 3300012204
• Scaffold ID: Ga0137374_10018638
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7910
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005811	Metagenome / Metatranscriptome	389	N
F083983	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137374_100186383	F083983	AGGA	MVIAPGGEAGYVKRSRIHFERGICFVVDLGRNMFEVVPKKIERVDAVTLVASTGFWHYGDVRMIFDSSADADIIEQKLKSELSKSKGKNLG*
Ga0137374_100186384	F005811	GGAGG	MHTQAITRQWIPRTAELTLAAGLAATYVITNFIPLTPFIGGPAFITLEIVMLPVIAAVLRPIPALATAFVGSLGMALGQPSFYQAFGLPGLLVPMIAAGAGSVAFHYGLGPILPWAYVLAGAAYYIALSRGGTLFWLIPYLLVIISLPAAFRLKENPRIGILTFYTAMTEQVTLNILSISLLSLTGPVWLGITPLMYLERTIATFGGAAGIVALKSALGGRLDIAKRIRKEVR*