Scaffold Ga0137374_10005732

Overview

Basic Information

• Taxon OID: 3300012204
• Scaffold ID: Ga0137374_10005732
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14768
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002096	Metagenome / Metatranscriptome	594	Y
F004437	Metagenome / Metatranscriptome	438	Y
F004501	Metagenome	435	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137374_100057321	F004501	N/A	IAILGASAALAGFVLVFLGIIIASYQSYPGGVPERVVRPYRVAGAALLAAFGWGLATVAVSLLWLIGGGPSALYGWTIALFVVLLAGVFAAAVWATRMVLWQ*
Ga0137374_1000573218	F002096	N/A	MHFIMCWALHQKEREVLLRGVLPWGIDAVVFCWRCDRMRGRAVRVLQLTPNGIHACSSAH
Ga0137374_100057323	F004437	GGAGG	LAQVSSDTTEKARKFIDASLRGRSKPPSKAAYARAVKLARVAIEELTLVAMRVRN*