Scaffold Ga0137374_10003201

Overview

Basic Information

• Taxon OID: 3300012204
• Scaffold ID: Ga0137374_10003201
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19300
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005305	Metagenome / Metatranscriptome	405	N
F005950	Metagenome / Metatranscriptome	385	Y
F013020	Metagenome / Metatranscriptome	275	N
F023903	Metagenome / Metatranscriptome	208	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137374_1000320113	F005305	N/A	VEDLEKELGPMIENFQNLLKDAKAKKIDSLREDEDLKKEFNKLSKDVIEPVMRKFESYLKSKDVNSSVNVRSEIVSGKNPSIEFILHFKLTHESRYPNIKFSSSGEKISIQEDRLITKGEVRQDMMLEYYDKEQITEDFINERLIRLIKSCFDKNWQSIYS*
Ga0137374_1000320120	F005950	GGA	MKMTYAKQKVKAKIHRTSDYDDKYTGIRDFSDEKAMLQYGLSKVHEVIIKKYTKDDEFMATAQKTRGIKFDYDMVLYDYICTDVRESKR*
Ga0137374_100032018	F023903	N/A	MVDLMINHEAKICDNCGDSVDQLVPLNDPTRIGRWWCLKCIYKEGKAKFDADPKNG*
Ga0137374_100032019	F013020	N/A	MSPDNNSNDKREQLKLDALNKIFGWIEDKETKAVMINKYCNNKEHRAALKAFLDDMVKALDESTAEINSKEEIKGQLSYIT*