Scaffold Ga0137374_10000001

Overview

Basic Information

• Taxon OID: 3300012204
• Scaffold ID: Ga0137374_10000001
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 798096
• Total Scaffold Genes: 689
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 468 (67.92%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021078	Metagenome	220	Y
F026047	Metagenome / Metatranscriptome	199	Y
F031298	Metagenome	183	Y
F035236	Metagenome	172	Y
F045029	Metagenome	153	Y
F045207	Metagenome / Metatranscriptome	153	Y
F059117	Metagenome	134	Y
F066913	Metagenome	126	Y
F078364	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137374_10000001538	F078364	AGGAGG	MTALFERLHLSQDEAEARLKRTLTGDPTRGEIALLAALNANKFDDVQRQLEHDASLGPDLRELVTEHMKKARARWETRKAWSVTVPLPVWEEYAREAKLTGRSITECLAASISRDYQRRRGTVEPLETLDQDVRAFHAAAAQLLQEARQVLERVGPLNDIGMRLARIESVIGARAPR*
Ga0137374_10000001540	F021078	AGGAGG	MESKDEEVGIRLDASLQERIGAYAARESMTPGEALSALLYLGLEFAERQRTGLREDIEDLQREVRDLRQMIDVLGPGALGTQRILCHWAAQTGGLRVTEDELLAEGRLVAEEEWQGQLAERGVFSPGTLVGKPEA*
Ga0137374_10000001542	F045029	GGAGG	VTHAKPSLRARSSDVKPRPNGSGSTPAVASSTTRLLPVSAKIDLALSREIDDYAKAHGITRSRAAGQFLEIAREALRAREGVAPAKAEEILEALEGVRTVVELLGPPSFGLMRLLSHWATQSGGLKVSEDELLAELRTVAGDEWEQALSEAERDLHLALKRARTEGRA*
Ga0137374_10000001545	F031298	N/A	MVQGLRVVFSPNPASRALYSYRVPGPGARGTVTAAWTAGGLRTYLVGPGGGFVYVRWDGDGQVCGVAMRDLKLEPAEDQPRC*
Ga0137374_10000001555	F035236	N/A	MNLLLGLPFVVVVWGLLLPWLLLDGAADYLGFLWENPRLVAALVLNLGVLSYWLARRLSQALLLRSTGAKLRATHEPP*
Ga0137374_10000001557	F059117	AGG	LVLTAAGLVLSLVTTIRVWNRPREVIRIGCDGIPQVVTLDSAAYSEPNEQEVRAFATEFAVFYARSDSYSILNDLVWCANRMAPELRERFKRSVRGTTTTPGIITVIEKLKRRTQIDPATLEIQADKRPYPWKVKVKGVRQVVGDAGPGETFELDLELVRASREEHLEGLLVWAIRAKGDPIDTVLAAVNAEGGRMP*
Ga0137374_10000001560	F045207	AGGAG	MRKRLGVVLVLALLSAGCTADILGRMKGFDVTQIILSVPVAEAVQKAKNIGRTLAGIEALILAFVCWYRIHAGGHWLSISKDWFLGILVCAFILTSAGTNAGLEQWIWKVGSYLGQQFNPTTGFLMENFNKAVGQHSEVILALQRLAPNAAPNSQRMVEAIAWQFSSPFTAGLVGLNAIAIYLMKMMMQVSYAWLICFYWMLTPLVAPMVILPQTRGVFLGWLKTYVSVALWPMFFAFAERLALAIPWSAWLGQFDGATSTWDMATRWFQGEIMLLIFNGTFFFVYLSIPVASYLIVSGASRPFRAL*
Ga0137374_10000001562	F066913	GGA	LLVGSSGASADPTNWGQLTQIILWLQRIDQTLKDINGVVEDVKTKLLVVYPDSALRRIETVFEPVDSIKREVEKLACTWRFTPRVSKLRLALFGGGSFCRSDWNLVFGAPTLTADWDLESYYDWSAVRRLNLIKTRNEKSPLRADEAHWLATEAIKGRDWLDPGQPYSPGYAQRLSALGAAELGNVMVEMGDTETAMLDLDQEALNDKRRRRLLDHEAAFLVYAGLTTLQGTIPDPGPLPLGDQP*
Ga0137374_10000001565	F026047	N/A	MKRRQSECFRNLDDPLKIFSLLTFKSCGLVLLFYAGAVATELLFGLWSLVFREWSFLAQLVAAGFLGALLAYTERHDDEHLVPSAIRYYASRRWRVLYGGARADQYVGHPLEGLVEGGPWRR*