Scaffold Ga0137399_10245575

Overview

Basic Information

• Taxon OID: 3300012203
• Scaffold ID: Ga0137399_10245575
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1466
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020474	Metagenome	224	Y
F029292	Metagenome	189	N
F033381	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137399_102455752	F020474	GGAGG	VTQEDTQDIEVGEPIYECPDCGSVTIRGKWSIEGAKTLTDAVQMLRDYAHELEHMRASGLELSSPVEADYGIVRPGGAPSDDDSEDDE*
Ga0137399_102455753	F033381	AGG	MEEGWRTVVDGQWLRDCMEEWRDYGHLVMRAKWTMDGATTLAEAASRFRERARELDELARAGFELEQPVNDDYAFIVRPGEESPMRLVEEDE*
Ga0137399_102455754	F029292	N/A	VTEDELREYIDEWRDFGCLFIRARWTMDGARTLIEAAQRFRDRAETLEQLALAGFELDKPADNGFAVAVRPGEESPMRLVEADVKANA*