Scaffold Ga0137399_10023495

Overview

Basic Information

• Taxon OID: 3300012203
• Scaffold ID: Ga0137399_10023495
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4096
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010795	Metagenome / Metatranscriptome	299	Y
F031940	Metagenome / Metatranscriptome	181	Y
F042501	Metagenome / Metatranscriptome	158	Y
F103626	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137399_100234954	F031940	GGAG	MRLPFCILNVLGDVLDGGELYFVEGARNLDAAKARVQSLAELLPGEFVIYNEATGERVFITAEGAAPQ*
Ga0137399_100234955	F042501	GGA	MVKARSDVPVSVDAVIDSLRIQGIAFRGPFCTLSKRTIFVVESCILLESELVDLFAQNKLNRDGIQELAKRNTWLFQ*
Ga0137399_100234956	F010795	GGAG	VSSYVERADDIVRAVKLLQQHGMAVGFPMQTADGEIIFSVGKDFTLTADQILELLEHSELDAEGVRRSVEAQASATPPFRRSYQ*
Ga0137399_100234958	F103626	GGA	MDENEHRDHLHLRDLLQQANRLLIPMSPIQQNEWVANSPLAQEISIILAKHLEYYAELRTLVGGIFPEPKGKSS*