Basic Information | |
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Taxon OID | 3300012203 Open in IMG/M |
Scaffold ID | Ga0137399_10000990 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12471 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (44.44%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000624 | Metagenome / Metatranscriptome | 977 | Y |
F001619 | Metagenome / Metatranscriptome | 662 | Y |
F002853 | Metagenome / Metatranscriptome | 526 | Y |
F021509 | Metagenome / Metatranscriptome | 218 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0137399_1000099011 | F001619 | GAG | MKDFLQRLFNSRYIGMLEADIARQRAENRALTNSLLGTAGFPPLEFPEAPKPQPLPRLRKRSWHQLQAWRETGANRDASANIEERTSERTNGLVPHS* |
Ga0137399_1000099012 | F002853 | N/A | MTDQERANIDALNQQFFGQQQQIGSTLLPQYQSILNNPGLSPAYKAAVTGQSQGALSSAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQTQKNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRSNGSGFFSALGSGLGSTLGALPGAFF* |
Ga0137399_1000099013 | F000624 | AGGA | MPARWYAVLTAAVSAGVQFVLFLRWLHRRMRNEEITRAFVRDIATNHLPHIYNALQQIAAKQGIEVDDTPLVRFVDLNGHRRRN* |
Ga0137399_100009909 | F021509 | AGGAG | MTGIPVSGPSFFEKLTNAIHLDYVLKIAGVGGFVWAFMASWHTLGLGVKASMLASVAAWLVGSRFSKIYR* |
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