Scaffold Ga0137399_10000371

Overview

Basic Information

• Taxon OID: 3300012203
• Scaffold ID: Ga0137399_10000371
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17326
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010345	Metagenome / Metatranscriptome	305	Y
F045043	Metagenome	153	Y
F062651	Metagenome / Metatranscriptome	130	Y
F082459	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137399_1000037111	F010345	GGAG	MSFLARSWRYSLDTYGGAPLLLIVTLIQLTLLAWVIEEGVRARAERNAPGLSADARRTRAAHRADVWQKQVRPMALTMMLLGPGLGLGMSTLLGALGMGALGDAMGTQAAADALASTMAQAYREISYAYFLMVGGTFPMLLGPVIVLAARRLDEDGHDARGGEPDEILLHTLKSLLAVSEAQSSRAQQDAARTHALLEQTAALLARRIAA*
Ga0137399_1000037113	F062651	GGAG	MFLLLPNQEDHTMSKPTLLLAVAASVLASCAHEEAAQLPDRDWTQGLDGKLAPQIAPLGPLESDQGAYDLVRRRERERALGSRLTGAQLDEIIAASSQVLASALALPLFKAGVYLGLPRLLDKGCVAARRVTHAALRAASNVDAVLQACGTLTGGRASSDACGEGQQKLREAYALLVAEKGNEAGHLAADGVRLLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPATFLAGETAPATAEAINEGFLRGVQALRAVAQNF*
Ga0137399_1000037116	F082459	GGA	MTPRAQVLAAAFAFVGRIAAAPQADCSTLRGAQAPDDPRLREWLRRLVHEVARKEGVDPIALEALGMVETELRPMVGRACEIGPFQVMPAWAEVFRLDSVAQLWDPRINAIAAARIYKAGWQRWDPRFAKAGRNRTLQAAGWRGRSLDRETFAALAYNWGRAPRQFARASNLREVAIPASSASYAVRFSRALREGRQRAATLAQRGRG*
Ga0137399_100003717	F045043	N/A	MTPAPPPQKSAPEQRTRIAVDAQAVQGIRLRVLVPRTPGELAAHLRNSGGCMVVSRLSGGTAEVLSVLGVDGERAVELPGAPCAGVPRLLRDGGLNAALGDPVGRARASLPRAERGDELALQVLLNPGLHEVAQYALRAHFGPMPEEQMARRAAETGYELTCFAEPTGSLRCQ*