Scaffold Ga0137363_10138951

Overview

Basic Information

• Taxon OID: 3300012202
• Scaffold ID: Ga0137363_10138951
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1896
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004042	Metagenome / Metatranscriptome	456	Y
F015246	Metagenome / Metatranscriptome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137363_101389511	F015246	N/A	RISGVTQRGSGGAALLAGVTTFFGLRPGLHVWVGMDWDVAHSAGASFMPVRRHISFGITQQFRLHL*
Ga0137363_101389512	F004042	AGGAGG	MKAKKIALLMLLGCALGPVAQAQIEHIEMRVEGMT*
Ga0137363_101389513	F000092	GAG	VKQHLGRQSGVQSVDVSLIDGKVQVTPKEDGRIDPGQLLKAVYDSGVSVAEMDVIARGKVVKDGSGALTLEVAPNQSFGIEANEASKELEALAVQATVITVRGQLYKKPAGKKKQKPDTSAPLKILILEVQKKE*