NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137363_10134733

Scaffold Ga0137363_10134733


Overview

Basic Information
Taxon OID3300012202 Open in IMG/M
Scaffold IDGa0137363_10134733 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1924
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046497Metagenome / Metatranscriptome151Y
F069887Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0137363_101347332F069887N/AMRIANHILLAVIVIALAMYAFDCLAMSTPDEAMQCCDTMPCSSHSHEHSQECCKTMPSMHAPFVQPASVHGLSFSPVFIAVLPGFNASQGLDSASKVLTAHCHAPPIPQTAAPSPLRI*
Ga0137363_101347333F046497GGCGGVFGLLLLPIFVSTAGAQGPAPETAPPLFPGGGLISYNSIFNTRAPVSIPSGNIPSTARPTFSHEGDFNFTWGVRRDFDLTVLVPVMTNHFKIPKANGNPVSGGTGLGDAMVLVKYRFYRRDSKRGTTQASVTFGPKVPTGRTDLAAMSGIRLPASLQPGSGSTDFFVAVNWTYTGLFNLRRLVADEDFHSLLRTQGTQKTRLGSDLESRFWLSYRPYESKNGDREWFIGPVATWLHSQDDRIAAVTQRGSGGDVLLAGITTYVGVSPGMHVWLGMDWDVAHSAGATFMPVRRHISFGITRQFRIHLK*

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