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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012202 Open in IMG/M |
| Scaffold ID | Ga0137363_10037126 Open in IMG/M |
| Source Dataset Name | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3409 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000127 | Metagenome / Metatranscriptome | 2019 | Y |
| F000242 | Metagenome / Metatranscriptome | 1480 | Y |
| F051406 | Metagenome | 144 | N |
| F084661 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0137363_100371261 | F000242 | GGAGG | MCWEIDYKFFAEQKKAQQTRIEQERRAGVIHQLLNEANKQGEPSNVEGT |
| Ga0137363_100371263 | F051406 | AGG | MFSFFRRRKEADATARRIIDQGRFLGARTPREAVEMLWARPLSENEWVRHASVWERIWRESLKERPIESEMRPPYQLRLAISAVTDEPISGKNATENAANAVALLTTAIVKKTISTIADDDDRFVAGIFVFVFSDYFTLVLPGNFEEASTLAMMKVLGIEEFHRGFDTIQESYNELVRSRPKILEGISKACEAWFKNPEPSQFEKLVELFKIARTHVVQK* |
| Ga0137363_100371264 | F084661 | AGGA | MNRRVRELVLISVLAAFCGGLAWAHDQELFAAAFAAAAVVAGFEARPS* |
| Ga0137363_100371266 | F000127 | GGCGG | MSKAITEECMALLKEASEMFEETGCVPGIDGEQVPAEMIVPDAKEYISETIDDPETMYDPEIWDTPGFALVLSWLAQKWNRRCQKLAPRGKSPEQYLTKEQQKACLDSAAAELIREIKHKLSLN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |