Scaffold Ga0137363_10000439

Overview

Basic Information

• Taxon OID: 3300012202
• Scaffold ID: Ga0137363_10000439
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23135
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F005666	Metagenome / Metatranscriptome	393	Y
F007493	Metagenome / Metatranscriptome	350	Y
F027294	Metagenome / Metatranscriptome	195	Y
F041398	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137363_100004391	F027294	GGA	MRVFKGFAILLTVTMISVGTFMLYDPMAQRSAAASDSVIAGAVLFSLALTLLYFLPRPALK*
Ga0137363_1000043913	F005666	GGAG	MKVLSLRILLPIAALLVAFGPNPARAQTPLAPAQMSPHTAFYLIWHGVPSPDVRKANSLLALWDDPDFAPVSSAMASNLMGSSAEKTPKEKLLADEIQQYAALLENSFTIGYVSEPARRTASNAGGSLNSKPAWNGMFLVYDRTGKEVLLSKAVLRLRAEEKEAPRLSQVTMEGVQVLKAEGKSGISYWAEHGKYAVSTGERSVMEEILGRIDGKLSGAASLTQSAAYQEAQANLGSGLIEFFLRIPDLENLAADSKTGTFQVRPLLDAAGVAALHSVSGHVSFEGAKTHVQAALLGDAATGTPFDIWAAGQSSLASLSFVPVDAVSYTSAQLNFLGIYDTVKRVARAAFPQAQQGNADLLDTIAQHKLGMPAAEALGLLTGEFASMQTSASMDSTRQVYFLGIRKRPEVLKLMRTVFSDQITSERNEDDVTFLKISLGGKQGSAQWNSFNLAVAPDMIVGANRVETLREVLAHRAHPSAVEGLATAPQFQAGRAKFPEHLNGLSYFDFQKVDWQALKNRWIEEAKKSPVARTMNSSQNVVPSSAPDWLAQCNPQVFSRHLHYSVSVSWKDSKGIHWDQWVE*
Ga0137363_100004392	F041398	AGGAG	MTKLRIKKALYMLVVAAAVAVFSGVVPVPFLNAGKHNLPAIQSHGVVTLRADGTDPVPPPKPLPWLGVAS*
Ga0137363_1000043921	F000092	GAG	VKQHLGRQSGVQTVEVSLLEGKVDVTPKEDGQIDPAQLLKATYDSGVTAAEMDMTARGKIVKDTSGSLALQVAPNRSFALTPNELSKGLEALADTQTMVTVRGQLYKKPAGKKKADPSASLKLLILEVQKKE*
Ga0137363_100004394	F007493	GAG	MRLPGEGGALVIGTSSALIGAVVFLLLILVWIRADSSSRRLPSVLDTWLPDQDDAAEVCPPEFVAQIFSGQDLAFILRLESPDLKRHFLRERNAVALFWVQQTSAVIRRIMRRHLEASRLSADIEFAMEARIFLQYAKLRLLCAVLFLLIGLAGPQKLHAIALYADRLTQRIGSVLREFESGVRMREMDDA*