Scaffold Ga0137365_10042655

Overview

Basic Information

• Taxon OID: 3300012201
• Scaffold ID: Ga0137365_10042655
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3458
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038792	Metagenome	165	N
F051331	Metagenome	144	N
F061478	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137365_100426552	F061478	GGA	METANIEINYEGTPMQVFHQIRVGRFRLYNAAARDAVGLVTEAWKRGALGKTFLVRPLTTQLIGEEVIDGSGRVIAVFGLTVTNAFRPDPKVQEDYREKLRAVLNEL*
Ga0137365_100426553	F051331	N/A	MKTLICLAVLLAASLVRADPVKLWDGKKRGMDLVAIGHKRVTVYLADGRTTVVGIPILVEKLKTATPVGKPASANHDHDAPQKR*
Ga0137365_100426555	F038792	AGGA	MNTPSRKQFMELVACFNLATEATKEQLASEYDQRTQQDAAAQRPITPMLLFCMERAGTPTRAEAIFNHVLKTSRISYWPMPELAPHLRANQEIKAICFKHFLVPIKASESLLVLCSCNQYDGEGPTAIWQKLASRKPPFPIVVLSEPERIRKALMQFA*