Scaffold Ga0137365_10042104

Overview

Basic Information

• Taxon OID: 3300012201
• Scaffold ID: Ga0137365_10042104
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3482
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000284	Metagenome / Metatranscriptome	1378	Y
F000936	Metagenome / Metatranscriptome	828	Y
F001440	Metagenome / Metatranscriptome	694	Y
F003338	Metagenome / Metatranscriptome	493	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137365_100421042	F001440	AGAAG	MAKAKSIGWAIYVAGFVIWLFGYLSPGHAAAFDWDVATPSWISSFVPNFEAELGLALMFASMIPIYWRVGRKRP*
Ga0137365_100421043	F003338	N/A	MPTRRHYRRPNPDRRRALELLAGSRYGYAKAILRAHGFSSDMLVELVKAGLATTKRERMVARSRQTEVVRVRITEAGREALAKMSK*
Ga0137365_100421044	F000936	GGCGG	MNHLAQANQHIAELTAQIVRQRVIVKYALDTGQRSEMAESLLDALERSLRIFEKHRELVLDQLQRQPVPDCPA*
Ga0137365_100421045	F000284	AGGAGG	LKKLLATIALLCLSSTVLAHDIYSNLRDRDGHLCCGGQDCKPVEAIVLPNGSYYLPASGETIPADMATPSPDERFHHCTYYLMVNEFDRGAGAIYESEPKTRCFFAPMNSW*