Scaffold Ga0137365_10020385

Overview

Basic Information

• Taxon OID: 3300012201
• Scaffold ID: Ga0137365_10020385
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5163
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000461	Metagenome / Metatranscriptome	1108	Y
F000788	Metagenome / Metatranscriptome	891	Y
F005602	Metagenome / Metatranscriptome	395	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137365_100203851	F005602	GAGG	MVNVFIGFALLLIILIAAAFLAYYFFPAAFPVFWRQANVPNQGVIKRDWVATGRIDFATSITKVTSNPEDYDQPAEFKLLVEERRIVESLAGNENLEVQWRLATLREAKAVVTQYHKYLSDHSLIKTVS
Ga0137365_1002038510	F000461	GAGG	MGNLLFWLGIGAAQKGAGSKPIKHRHWVASLVVGILIAVLIAVGMFFLLVSQQ*
Ga0137365_100203855	F000788	N/A	VQDFTETARRLARLNQHFRQASFAEFEMLMAFDDGVLKRYGLPKPMVERALIEVYQTVVLDQQR*