Scaffold Ga0137365_10005505

Overview

Basic Information

• Taxon OID: 3300012201
• Scaffold ID: Ga0137365_10005505
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10152
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F002111	Metagenome / Metatranscriptome	592	Y
F008327	Metagenome / Metatranscriptome	335	Y
F062284	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137365_100055053	F062284	GGCGG	VSRRDRAFHRHARAVLEHELYRARKRLAELPEERRSALEDVSARVVAAVVDSVLEESRREPALARALGSIYGPEPAWEPRVVSWATD*
Ga0137365_100055055	F000280	AGAAGG	MAQNRDDQPRPARPLFGYRDVGEEIRHGRSALTRAWIVLAILMVIYLAWTLTVYFIEPGLR*
Ga0137365_100055056	F002111	AGAAG	MAAISVLPFVSYSSMTETLIPAAQWPTVYSSLQALKGHVQEYPGCQSFDVFVRAEGDGDVLVHCYTTWDTPGQLEVFLERGYTFERLLADVGSGLSPARSLVMEKVF*
Ga0137365_100055057	F008327	AGGAGG	MSMPTGDTPEKVQQFYLYLNGHQQTTRPIESWHVDWLSVAWLWGFVFGLLAVLLLWVRQYRTTRQRPGIYPVDTFGGWTTEGAGPATGFFLLFTVLIVAFGVAIIVGHLVWGQKF*