Scaffold Ga0137382_10008330

Overview

Basic Information

• Taxon OID: 3300012200
• Scaffold ID: Ga0137382_10008330
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5375
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002680	Metagenome / Metatranscriptome	537	Y
F096240	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137382_100083302	F096240	N/A	VRFPKFKHTVLTGAALGALGPLLYYSSRPVRDYILGNGLFLWPTGVIIIVTYGHEHDFFGYAVTAISVALNIILYAAAVALLWFVVWIIRRGDAHT*
Ga0137382_100083305	F002680	N/A	MIAFVLIMVPLLAGVSVFLVRWFVSPYPTYMQLRRELDALTDTKKQERAKVVHGCFERSVVILKQHHSVLLSFHALSRAEGYRLESNKEVAEVCDLIQEAGYDHPFKGISPGHVPEKDWLPFLKYVKHAPNINPEEGKDYLEAADRWRQEHGYPLPPEDADFALLFEKTLLR*