Scaffold Ga0137382_10000136

Overview

Basic Information

• Taxon OID: 3300012200
• Scaffold ID: Ga0137382_10000136
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30100
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (72.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000528	Metagenome / Metatranscriptome	1047	Y
F084520	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137382_100001361	F000528	AGGCGG	MGEWKAPLSLRVRRDLRAGLEEIAAREQRALANLGEVLLEWSFKQLQSAGSTEQLLKYGIRRRGRHAKSQ*
Ga0137382_100001366	F084520	AGGA	VTGLIPIVLLGILILIFSGRLLVQWSRKNRARLVTIEDYSNARTALDSVFAETAAIRRIFANEDMEFISQAGTDDVQRFFLKERKRLAIQWVRMTRNQVAHLIDLHLKLASYTYDPNPRSEIRLTVNYLCFILASSGLLILLWLFGPFKMVRVVAYTVRAAEYFCSVFSLRLEKINPVKLASAREPRSV*