Scaffold Ga0137382_10000004

Overview

Basic Information

• Taxon OID: 3300012200
• Scaffold ID: Ga0137382_10000004
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109435
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (82.80%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001292	Metagenome / Metatranscriptome	729	Y
F001684	Metagenome / Metatranscriptome	652	Y
F002424	Metagenome	560	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137382_1000000420	F001684	AGGGGG	MGNKSDSSISRREFARRATFVSVAASLAPSNLFRPESIAVPRPGQQPANAPKLSPESQSEVESRIQAIFAQYGKRLSDAQKTDIRRLATDAQPPLDRLRAFATDNGDGPGLYLKPLIERERKPSPKPATPKPAATPKSS*
Ga0137382_1000000444	F002424	GGAG	MRRSSIVFSLVIICFFLGSFPGSAQDPKDAPAAQPEPWYSPKKYNPAKLIKHSSKSANDQLASDGDLEAKLTRQLQVQDILAQDKNLQDACSSFNELTECVASLRVSHTLRIDFSCLKWDVTGVKPKPVSDSCAGPAGGKAMGLTRSIDLLKSDSDAKSQARDALRRARQDIKDASD*
Ga0137382_100000047	F001292	GAG	VGKSGGLALTANEQDCAEQLARFFPHARPIRIPVQVITRRGGGTSLREAAVVEYGGPEHAIFVSNLPLEFDDHVRIEATGEGRPTEATVVGVQYHEGRKAVAVRFLQGPCDWVVTQP*