Scaffold Ga0137383_10071673

Overview

Basic Information

• Taxon OID: 3300012199
• Scaffold ID: Ga0137383_10071673
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2497
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001127	Metagenome / Metatranscriptome	769	Y
F054656	Metagenome / Metatranscriptome	139	N
F058276	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137383_100716732	F054656	AGGAGG	MMPTVQEQLFEDFVHFAAKQGSGAVYQRDSHQSVPPGCVFVRFRAPGEGSFTFAGIVQFRQREEGFTACKTFVASRDKPIELRMNFPRESPQNFPSPTFTEAHQVAKSRWLRWKRALGSWWH*
Ga0137383_100716733	F058276	AGGA	MSHAMIEKGGQFRALQAQYGAFITEQDVVTDHVISTATTARLEALDLELCRWEDVHKDEIKAFGGIDTFTTPAGPGVLPSTGLEPAAGALDWAGASARNPC*
Ga0137383_100716734	F001127	AGGAG	METYIEQYQAKYGGVTLHTWTDVQGEKKENFYITGVSGAPVASWFREVLSTKHLADIAAFPYTPSSFYD*