Scaffold Ga0137383_10015656

Overview

Basic Information

• Taxon OID: 3300012199
• Scaffold ID: Ga0137383_10015656
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5168
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019111	Metagenome	231	Y
F036179	Metagenome / Metatranscriptome	170	Y
F039071	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137383_100156562	F019111	GAG	VEGNERDENELRSEIIDQLQQSLAMSREMMMNQKLDPKTREKWTQLHTNTAQVLNTVLRDKQYQEWERRLKELEAAGWIPRKPAGSLDGSSGASGRRESPYM*
Ga0137383_100156563	F039071	GAG	LVEGIREIGQRDELLANIRRLSGIVLNRLEEGSKEGTLDQAQIRLLGSIAMKSLGLWQEALNPRPRRGLRREALEVEEGLSKQTADKGEQA*
Ga0137383_100156568	F036179	AGGA	MSESEDTDIIPSPTSIVRAPTDITSVNSSLAKPAIPRRDSLEKVTYYKLDLDTILDGLIPDPLPESGGKDNAIHHLNIIIFGKPNTGKTTLAESIAQALARRYGQRNVKALR