Scaffold Ga0137383_10006624

Overview

Basic Information

• Taxon OID: 3300012199
• Scaffold ID: Ga0137383_10006624
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7547
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002993	Metagenome / Metatranscriptome	514	N
F006078	Metagenome	382	Y
F014244	Metagenome / Metatranscriptome	264	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137383_100066244	F002993	AGG	MAYGLAEGFRKTAVRLGGRKKSRAVVIATFGNHFTLNDALEKFRKEGLTFETEKGHVVKIFLDKNTKERAEQVRSIIRENFGYVEPL*
Ga0137383_100066247	F014244	N/A	MVAFGEQTYTLLSEEARARGITIQELLRAVVIPDWFKAKYEPAPRQSPIIERRTREEEPVVPYSFSNKLRY*
Ga0137383_100066248	F006078	GAGG	MQALKTAGLGAVTPIEPKVKVAPQSVFYALHTRDGTCASGCGVSQTGVAEIVFGVEIVEWDLCSVCLSRTGFLEYFNSLPPATLREAEEIKILLGISNETFERQN*