Scaffold Ga0137383_10001895

Overview

Basic Information

• Taxon OID: 3300012199
• Scaffold ID: Ga0137383_10001895
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12620
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001727	Metagenome / Metatranscriptome	645	Y
F029380	Metagenome	188	Y
F041038	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137383_100018954	F041038	GGCGG	MSQLLPYVGLGLLFLVVLGLWVRQSFVTRAGRAELLVPRQHRSGVGRAAPLRDLGERIFGPEDWDFVSRDTSSEIQRMFQRERTILALAWLRRTRMRTSQVMRAHVVAARQSEDLQLATEIRLALSYLLFLILCDFLIGLIWLRGPVRTRRIVRQGFHWAAGLRATFEQLMAIVDPANRRALDVGFNQGTAQS*
Ga0137383_100018957	F001727	N/A	VDRFGRRISPLVLIAAEEIGRRAIQHAEKLQVDPAIAANLLEEAASAVSRAMERKRDCTQDPVRDLRAYLFRAFIRRVNKTVMRQLLVENAVRILFVTSHNSTNPLAELEMKILVDELLTRGDPVARDMFYRRIQGLSWEEIGSSYGISAHAAESRFSQALHRIRKRLGLKEEFEF*
Ga0137383_100018958	F029380	N/A	MDTNRKPSPTEPQTPTVAYSPFSLDLSTLSRVRGVEPSETKPQRLVVPASALDLTLTLPFASREGSYDLKLASEDHTFWSKSAVAHLQKGKTLLRLEADFRQIPSGNYNLEVQSSSGINLTQPVSIHGESPKGGEQKP*