NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137383_10001085

Scaffold Ga0137383_10001085


Overview

Basic Information
Taxon OID3300012199 Open in IMG/M
Scaffold IDGa0137383_10001085 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15631
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F002850Metagenome / Metatranscriptome526Y
F004352Metagenome / Metatranscriptome442Y
F006575Metagenome / Metatranscriptome370Y

Sequences

Protein IDFamilyRBSSequence
Ga0137383_1000108510F006575GGAGMSELERAIESAMATSPYLSLRQAVRPAILAHRLLAGDQERAGKLAADCEDLLVLTRELLKAAGRVRLLAGPAPEARTPDPDESGGDRRAQLLEAYADAGLFWAKVVGCSVALAGALIERGEWDDVRRLASFLAGAGEESAAADLRMQLGKAVFQTHREQLQGISNTMPPAAIGKAINALRAVLRGVPEDFPDRNREVNRFLPPLASAIHAIMKEQGIDIPFSSRVEHIATGGVAKYPDIVTISLDELAAEFEGSCS*
Ga0137383_1000108511F001698AGGAGGMAGVINDIEALAEFRAHLMRFNRDLAENFATIQGYWRELGEVWRDDMYRLFGEALEEVTPGITQYLSATEGHEAHLAALIERLRGYLETGAGAGLGVNRPETGRGTDRRE*
Ga0137383_1000108512F002850N/AVSSIHADIDALKGLHEALVRYRHAQREVAGRGDEEIKAIRASLEAKASRWRAQLEQCQAELDACRERAAQAAADGPTAGDGPTAGDGQVDCSGYARAAEQCGERLEQIRRWQQRIDAAASEFQGTADRFGDLLENDLPRTEEHLLAVIRSLEAARRVQAPGS*
Ga0137383_1000108513F004352N/AMVTRPDRDGDQHLRLLDDAWDKASQHWHDGMARQFDTGHLTPLRHESRAYLEALRTLMDTLEAAERETEA*
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