Scaffold Ga0137383_10000677

Overview

Basic Information

• Taxon OID: 3300012199
• Scaffold ID: Ga0137383_10000677
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18454
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009257	Metagenome	320	N
F011744	Metagenome / Metatranscriptome	287	Y
F016133	Metagenome	249	Y
F043324	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137383_100006771	F016133	GAG	VVSILPKFMQTLDDLIYRELEKMAKRRGITIQELIRAVIVPEWINGHNGGDSRDPPASKLNNWR*
Ga0137383_1000067714	F009257	N/A	MSDSGSALSDMEEGGDGMAKYAAMVLEFIKKNVFEDRKQVSVEEVVTLIAALTDISVSLLSRFRKDQVDPAKATEVGRDVFKYMVGRLGFDIDKLGKSNIYV*
Ga0137383_1000067719	F011744	GGAGG	MEKLKPGDRIWVKTPRLVAERKIGTIMATKKTRNGLRYIVEWDVDLEETPNHHPGYLATEIAPMNH*
Ga0137383_100006774	F043324	GAG	VREQQKDGKNEPEMMTWPFATRQDLNLKRMLSRMLKAARLDGDTFRELRDDASTTVQSVSLVAIIGLCYGGGLGFFGFFVAGISLLDTFTIILIGLFSAVIIAFVWSGTTFLIVTKLFRGTIGYWGLARPFFFSWAPGLLFILMSSPIPIISEIIRAAGTAWIGVASVFAVKHAAGFSVQQSMLTFIVSVLVLIFIQSLVPVN*