Scaffold Ga0137383_10000152

Overview

Basic Information

• Taxon OID: 3300012199
• Scaffold ID: Ga0137383_10000152
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30182
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014247	Metagenome	264	Y
F019975	Metagenome / Metatranscriptome	226	N
F082488	Metagenome / Metatranscriptome	113	N
F084043	Metagenome / Metatranscriptome	112	N
F088611	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137383_1000015216	F019975	GAG	MVHPARVKSKGLNGIPHLPFQEFAVPSLEAFLSVLKKAKIRDSEIEVSSSVESQHTMCSRPLIHVLMMTAKGSGPAEYRDLAALYQYCPGCRTAVRVL*
Ga0137383_1000015227	F088611	GAG	VSKPDLEALVTSRIAGAVQAAVDKVGRNEFETIVGINDQDLAAILSVEDVYIGVALVTIACQINKGHNDPDPAHSSVTECLKGTTIRVPPVGGRVRSPAVQQSIDRKRFQRLGSGTSPTGPLYEKKTLRLLSFSANTAAFLILGYFLGGIAISPLIGEPSCIGVSATPPGLVPCGGSIIGLVVSAIGGIGYTYYYFVKKL*
Ga0137383_1000015228	F084043	AGG	MSSVSKTSTLRIIVPKILAQRAISSLGPLGKVEAQELVLDTGRMTTDDVVRHIKEYAKLRDGISQTFRQIGIERKPESAIPETSNLRTTGSEAETQAAEARSEYQRILSGAEAAERQVQEIEKQISTVEQLKATGFNFDEMMSSATGFRRILGRLPSKKLDAAQKALRALLKERAIMTTGAKKNDSVYILAATPTEDASQALQTLLLYDFVPTDIPNIEAADATAALMSWQMEKNRLIREKQSQNSRLKALREKLAGPLNRSADNIEETLLLLRGSLRLGDGTKAAHILARLDKPLAPVVLNSLQKDGVVELD*
Ga0137383_100001525	F082488	GGA	VSGIVILGVGVLYLLYSSSNPDYFQVAVFALPFGCLNLGFGILTAKGGGVSTPSNARDPAKMVVDKGVIGSTVYLMVFSDKKLVLKRLTSGSVTVLAVVVLAVVGLLFAGYIGAAIGGLTAFSLQEFLTQRRRDATKTGNPLAASGKGDLEFAYADLERVQLTKSRLRLHLRNGIMGIVISRRYPEKMRPIMEGFISSSKMAEPV*
Ga0137383_100001526	F014247	N/A	MASVGRSLFWSGLWVFSVATGLASMIFMAWAFYLETTGRGALFIEPNRVLAAGELATVATGMVALIILFLRALSRRD*