Scaffold Ga0137383_10000092

Overview

Basic Information

• Taxon OID: 3300012199
• Scaffold ID: Ga0137383_10000092
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34022
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001727	Metagenome / Metatranscriptome	645	Y
F006427	Metagenome / Metatranscriptome	373	Y
F011165	Metagenome / Metatranscriptome	294	Y
F033129	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137383_1000009212	F033129	N/A	MADRWASATGNYSFRFFSPEQIDRILREGVKRGGTGSHSAIERILKHEPGLGRAELWRRIRQFKQPSNGNLYQRTTWSPEDDQVLRKGYEGGWKGKREAVGELLRRHPGWQPHSIWGRAARLGLVRKTLKKDRLRSRQPWTEDDDRILLTMAGYKTAEFIAKALHRSENAVRYRLAVLGKSSRVHLEGYARRTLAQELHVGIRTIQRLIVQGLLDVRDPRITRKSLEDACKTGRLTASLHDQPPDAKESSTIPREEEPAATPSNNSTPVAPGDPSKPPRSCRAKRIWADLAKQLGVHPGVIEHLVFLGVLKLYDSRVTEKSLTKFCARYGALIKTDFLDAETRDWLAGSMDLAPAAGKVAAQGMEAFRKHALVVRTCEHCGRAIRGNVFFRHNKRCPQRNARTESKVSVSKRIQSAEDAGGK*
Ga0137383_1000009224	F006427	GGA	MKDRRAFEKKDKDLLDFAHSYLSEAFPNPDRQGCPPDAALRSLSLSPTESEPTVTEHLAACSPCFRRYAELLAQLKSQRAAEEKLSWARVATWSTSHPVLVGAALVCALLIAIGAGLLLNRIRVPNPPPLDTHRAPNPVQPLNPAVAYSPFSLDLSTLSPVRGSEPSTTGSHQRVRVPSSPLYLTLTLPLASEERSYNVRLTAGDRTFWSMSAQAHLHEGQTLIRVEADFRQVPPGSYNLEVESLAGVRLVQPVSIETALPNSTEQK*
Ga0137383_1000009225	F001727	GGCGG	MSSAVHDAAEEIAHRAILHGEKLHIDPAVAANLLEEAAARVSRAIDRKRDSNEQPVRDLRAYLFRAFLRLVNKAAKRQLLVADAIRALWVTSHNSTDPLAQLERKILVDELVTRGDPVARDMFYRRTQKFSWDEIGLSYGISGHAAESRFSQALRKIRERLDPKSRL*
Ga0137383_100000928	F011165	N/A	MKTAKFSKLERRVGQIASRRAHRQLMQVPWHRFHKAYEEYIRWQAFVLWARAVVESEGFAPSWLKAILRKRCPGFVEEVDRSNKTELLGLQLLPWVHNQVFGFAKDEGWPDALVFYGFRDTRSQGCWAYWEHCDSEWKKRRPTEIPSFVQWRRSALNWKLHGDVGCAAVTKAVEKYIDFEAFVYWLRPLFQVPTIKLPANIALELGQQSPSLLEFVRREMAAGHEDKSRSWKRLFNWGKDHALSHAKKEGWLDCVLRQAGIHPRHVRLVDYSALWCKSRRVNTALPYPHLRQWQRNMEGYVRAGRK*