Scaffold Ga0137383_10000005

Overview

Basic Information

• Taxon OID: 3300012199
• Scaffold ID: Ga0137383_10000005
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66186
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (64.79%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F006617	Metagenome / Metatranscriptome	368	N
F007968	Metagenome / Metatranscriptome	341	N
F021077	Metagenome / Metatranscriptome	220	Y
F023308	Metagenome / Metatranscriptome	210	Y
F031371	Metagenome	182	Y
F097057	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137383_1000000524	F007968	AGG	MRYILTVDFEDDIDIDSFLRFVAYHSKRLKCTSKDVFIRLAHEWEKQLVSTHEPTSPNGTKKEKKKTLKETSE*
Ga0137383_1000000536	F031371	GAGG	LSKGFGRWVYRLTLARWYYNYAWGWIIGYFLSTFSMIVTIYYLIPGLRDLFSFPVFLGGSGILLVGGGWVLGKLLAKRFKIQPIETYISSEVNPFTNAALTAKERVYWNAMVVFLKKEHARAPDAEVAKCVEQMNISIKGKVPFNFDELDNFDLGEEPEPQGPLTKDATKWSPPGEIKDGVSETPI*
Ga0137383_1000000537	F021077	N/A	MMVYLIRTAVPKLKFNKEYLQRLTKPIPKKEPGTKEATTAEVQAQPRHPTGFLQYCTNCGKSQMFRVDTLGWKTCTVCHGTAPDRSQSPI*
Ga0137383_1000000543	F006617	AGG	MAGAKPMLLWYVWIRLVDGAWHRLDDISKQLHLPKNAVEWAAKFLCDKGMAESGFEEGEIRLHQGGARFEDAVKALVPSTKPQHSGR*
Ga0137383_1000000550	F023308	N/A	MGTFLTLGTVLIGNWIGGYGFPLAWKTGGCPPPGIAISTSCLLAIAYDWLGFGLDILFYTAIGYGLLLAYAKYRSRQEEVERNHSDRLSQRILNKAGPMHRDLYLAL*
Ga0137383_1000000564	F001571	GAG	MISQVRQGPERVPERRLALVHRVIVPDKEYPKEYAILVTDRRSVFIRQRKTRRSFVLRYEMRIGTALVTDVIPKTLDDFEQTSVESLMADDSNLTVPHEAVVSLAMRAEEHERRRHDFFLWLVMRRQGEVFQVYDFEMKYRLGPHQDATVKFYMVPLGVYFKPRRQTQSRETILREYAADALEIFQKVLPPDCIFVA*
Ga0137383_1000000566	F097057	GAGG	LIDISDPVFWSTIAQTIVLTLTLVIFILSFRSQNNATREAAYQRALDDYTDSMKMLVENPQLSKLPMEMARANMPARAELQSQPPESMVVRNYMLLLYGIFERIHLLYRKKWIDSDTWNQWSLFLEAVTRHPAFRDVHRTSEGMFDKPFQDYVSNILSRKS*